There are realy no errors to speak of, just the HMI alarms that pop up. In this case I knew it was not reading the I/O because of the ESTOP alarm. The programmed alarm was triggering and the input to the module was fine. In addition to this, the online Harware Compare is totally blank on the target side.
I did compare the 2 projects (IF2 Configuration) and made some changes there and this seems to have fixed the read issues.
Now back to the issue I was trying to fix when I created the I/O read issue.
